Linkage analysis with whole -exome sequencing data

Which software do you recommend to perform classic linkage on whole exome sequencing data?

Thanks

linkage whole-exome-sequencing

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updated 4.1 years ago by Ram

• written 10.5 years ago by wanabi •

I am getting this everytime I am trying to run my PLINK data. Can anyone help me with this problem?

ERROR: No file [ mydata.ped ] exists.

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updated 7.9 years ago by Ram

• written 7.9 years ago by nudrylab •

ERROR: Problem with compound genotype [ A ] should be two characters long

• 1 views • link

updated 7.9 years ago by Ram

• written 7.9 years ago by nudrylab •

1 answer

Plink

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updated 7.9 years ago by Ram

• written 10.5 years ago by andrew.j.skelton73

Thanks for your reply. However, I dont think you can do classical two-point or multi-point linkage analysis with PLINK or PLINK1.9

Thanks

• 0 views • link

updated 7.9 years ago by Ram

• written 10.5 years ago by wanabi •

Another one I came across recently is SEQLinkage

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written 8.2 years ago by andrew.j.skelton73

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