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Question: Linkage analysis with whole -exome sequencing data
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Which software do you recommend to perform classic linkage on whole exome sequencing data?

Thanks

ADD COMMENTlink 4.0 years ago wanabi • 60 • updated 17 months ago nudrylab • 0
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I am getting this everytime I am trying to run my PLINK data. Can anyone help me with this problem?

ERROR: No file [ mydata.ped ] exists.
ADD REPLYlink 17 months ago
nudrylab
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• updated 17 months ago
RamRS
21k
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ERROR: Problem with compound genotype [ A ] should be two characters long
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nudrylab
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• updated 17 months ago
RamRS
21k
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Plink

ADD COMMENTlink 4.0 years ago andrew.j.skelton73 5.7k • updated 17 months ago RamRS 21k
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Thanks for your reply. However, I dont think you can do classical two-point or multi-point linkage analysis with PLINK or PLINK1.9

Thanks

ADD REPLYlink 4.0 years ago
wanabi
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• updated 17 months ago
RamRS
21k
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Another one I came across recently is SEQLinkage

ADD REPLYlink 21 months ago
andrew.j.skelton73
5.7k

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