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wiki97
wiki97
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Joined:
6.0 years ago
Last seen:
5.7 years ago
Latest posts by user
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.stats file from vcf file with called variants - FilterMutectCalls (GATK)
gatk filtermutectcalls exome-seq
written by wiki97 • wiki97
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Comment: C: GATK CalculateContamination - zeros in output
written by wiki97 • wiki97
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Comment: C: Somatic Structure Variation on exome-seq data - pipeline recommendations?
written by wiki97 • wiki97
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2 replies
1.2K views
Somatic Structure Variation on exome-seq data - pipeline recommendations?
exome-seq gatk
updated by Pierre Lindenbaum Pierre Lindenbaum • written by wiki97 • wiki97
1 vote
3 replies
4.1K views
GATK CalculateContamination - zeros in output
gatk calculatecontamination mutect2
updated by aldhairmedico • aldhairmedico • written by wiki97 • wiki97
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Comment: C: MuTect2 annotations: number of reads at the given position
written by wiki97 • wiki97
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2 replies
2.2K views
MuTect2 annotations: number of reads at the given position
mutect2 gatk coverage
written by wiki97 • wiki97
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Comment: A: Is it possible to use VariantRecalibrator with only one sample? (90,000 MuTect2
written by wiki97 • wiki97
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2 replies
2.0K views
Is it possible to use VariantRecalibrator with only one sample? (90,000 MuTect2 calls)
mutect2 vqsr gatk
written by wiki97 • wiki97
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Comment: C: Which GATK tool should I use? - VariantFiltration exomeseq
written by wiki97 • wiki97
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2 replies
1.6K views
Which GATK tool should I use? - VariantFiltration exomeseq
gatk variantfiltration variantrecalibrator
updated by Pierre Lindenbaum Pierre Lindenbaum • written by wiki97 • wiki97
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0 replies
2.0K views
GetPileupSummaries input reference - exomeseq
gatk hg38 getpileupsummaries
written by wiki97 • wiki97
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