More posts like this
-
detection of single nucleotide variations with RNA-seq
written by mlemusfuentes 2hello everyone, I need know if someone has performance detection of single nucleotide variants (SNVs) using RNA-seq data. I know that the gold standard method …
-
TCGA capture kits
written by enho 7Hi All, I am looking to do some CNV analysis on TCGA-KIRP cohort, but I can't find the whole exome capture kit they have used …
-
tool for the new protocol of WES for CNV detection
written by Sara 28to identify `CNVs` using `WES` data, I am trying to use WES data from a new protocol of `Agilent Whole Exon V7 + CNV backbone` …
-
step wise pipeline for SNP analysis (illumina Ampliseq sequencing)
written by rebecca08238 2hello everyone! I am a beginner in data analysis... 1. Can anyone provide the pipeline for SNP analysis, please? (we used Illumina Ampliseq kit for …
-
Can I merge the exome interval lists from two different kits for identifying CNVs using XHMM?
written by bioinforesearchquestions 38Hello folks, I am trying to call CNVs from trio (Father, Mother, Son) samples. Father and son are affected and mother is unaffected. I used …
-
CNV tools for hybridization vs. amplicon capture WES data
written by Jackie 7In this review paper (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-S11-S1), it lists several tools that are suitable for CNV detection with WES data (e.g., Control-FREEC, CoNIFER, XHMM, ExomeCNV, CONTRA), but …
-
aneuploidy detection in DNA sequencing
written by joerodger2017 2I am planning to perform DNA seq for detection of aneluploidy condition in circulatory DNA. Is there a set rule how much sequencing depth should …
-
CNV tools for mitochondrial chromosome using whole-genome sequencing
written by hellbio 52Could someone suggest any tools that work well for mitochondrial cnv detection using whole-genome sequencing data? Thanks!!
-
Germline CNV caller
written by Samarth Kulshrestha 30Hi, I am interested in **germline CNV** events for my Cancer data. So can anyone suggest me any germline CNV caller for Whole genome Sequencing …
-
Whole Genome Analysis Using Galaxy
written by KS 37<p>Hello Everyone,</p> <p>We will be getting human whole genome sequencing data in a couple of days. I will be using Galaxy for analysis.</p> <p>What is …
XHMM is supposed to be used in exome data, because the calls are based on the average coverage of each exon.