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Jackie
Jackie
Reputation:
70
Joined:
14.2 years ago
Last seen:
8.4 years ago
Location:
United States

about me

Latest posts by user
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Comment: C: How to create dummy VCF with fusion variants
written by Jackie Jackie
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1 reply
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Comment: C: How to create dummy VCF with fusion variants
written by Jackie Jackie
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5 replies
3.6K views
How to create dummy VCF with fusion variants
fusions mitelman fusion databases
updated by d-cameron d-cameron • written by Jackie Jackie
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1 reply
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Comment: A: Does Cufflinks report chimeric transcripts/fusion genes?
written by Jackie Jackie
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1 reply
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Comment: A: Does Cufflinks report chimeric transcripts/fusion genes?
written by Jackie Jackie
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5 replies
2.8K views
Does Cufflinks report chimeric transcripts/fusion genes?
cufflinks chimeric transcripts fusions
written by Jackie Jackie
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0 replies
2.0K views
How to download all the VCFs generated from WXS BAM in TCGA legacy archive?
tcga wxs vcfs
written by Jackie Jackie
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1 reply
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Comment: C: How to extract all the simple repeats from the hg19 reference genome
written by Jackie Jackie
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2 replies
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Comment: C: How to extract all the simple repeats from the hg19 reference genome
written by Jackie Jackie
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8 replies
5.4K views
How to extract all the simple repeats from the hg19 reference genome
simple repeats reference genome
updated by Alex Reynolds Alex Reynolds • written by Jackie Jackie
1 vote
5 replies
5.0K views
benchmarking/validation tools for CNVs
cnv validation benchmarking truth set
updated by jpuntomarcos • jpuntomarcos • written by Jackie Jackie
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0 replies
2.2K views
CNV tools for hybridization vs. amplicon capture WES data
amplicon cnv hybridization
updated by Ram Ram • written by Jackie Jackie
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1 reply
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Comment: A: GT tag in VCF spec
written by Jackie Jackie
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3 replies
2.1K views
GT tag in VCF spec
gt vcf tags valid
written by Jackie Jackie
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1 reply
2.6K views
What does 'frac' mean in cufflinks output transcripts.gtf
cufflinkts fpkm frac
written by Jackie Jackie
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2 replies
2.6K views
How to output a pdf with both tables and plots using perl
perl pdf:table plot histogram
updated by shenwei356 shenwei356 • written by Jackie Jackie
1 vote
2 replies
4.1K views
How to map NCBI contig positions to chromosome positions
ncbi ribosomal contig grch37.13
updated by tdmurphy tdmurphy • written by Jackie Jackie
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2 replies
3.5K views
Use Bowtie to trim reads in fastq files
bowite trim
updated by Brian Bushnell Brian Bushnell • written by Jackie Jackie
1 vote
2 replies
2.6K views
Difference between the two models in manta
manta rna-seq
updated by Chris Saunders Chris Saunders • written by Jackie Jackie
1 vote
1 reply
3.9K views
Questions about the splitting/spannings reads reported by manta
rna-seq manta splitting reads spanning reads
updated by Chris Saunders Chris Saunders • written by Jackie Jackie
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TODO: Awards