HM450k probes portrayed on chromosomes
Hi,
I'm looking for a figure that portrays the position of HM450k probes across on top of chromosomes. Anyone know where I can find something like this?
Floris
human methylation
450k
methylation
dna methylation
• 2,468 views
•
link
updated
by
easelpeasel •
•
written
by
floris.barthel •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to make a nice mutation overview figure like this?
written by Floris BrenkHi all, Does anyone know how to make a nice mutation overview figure like this [nice figure][1]? I found a similar way to make these …
-
Generating an ADMIXTURE plot that stacks the different values of K using R
written by devenvyasI am trying to create an ADMIXTURE figure a publication where I display my results for different values of K vertically on top of each …
-
genome viewer java API
written by bell •<p>Hi,</p> <p>I'm currently working on an java annotation tools, and I would like to implement a visualization of the genome with various options. So I'm …
-
Hapmap--percent common variation explained
written by kbountre •<p>Hi--</p> <p>I'm new to hapmap and wondered how to figure out what % of the common variation in a gene I'm able to explain using …
-
Tips to download pathway information from anywhere (but KEGG)?
written by fr<p>Hi! I'm looking for a place where I can download pathway information for aminoacid metabolism. Kegg's FTP would be an option a while ago when …
-
How to find most common copy number changes in cancer
written by sebastianzeki0<p>I'm looking just for a catalogue of amplifications and deletions in any cancer type. I am hoping for a COSMIC type resource specific to this. …
-
Where to find T cell epigenetics data?
written by Zakaria Benmounah •<p>Hi</p> <p>I'm looking for the T cells Epigenetics data, any one knows where can I find this data?</p> <p>Many thanks</p> <p>Zak</p>
-
SGA: get the coordinates of contig scaffolding
written by iraun<p>Hi there,<br /> I'm using String Graph Assembler (SGA) software in order to do a scaffolding. I would like to know the possition where the …
-
Specific versions of samtools and bcftools
written by Will<p>So, I'm trying to figure out how I installed my `samtools` and `bcftools` versions so I can replicate it across different computers using conda. I …
-
Genetic Distribution Of Snp Along Chromosomes - How To Get A Graphical Output?
written by Bioch'Ti •<p>Hi,</p> <p>I would like to find an "easy" way to get a graphical representation of a set of SNP markers along chromosomes? (I have their …
Have you thought about just making one? You can download the probe annotations, convert them to a BED file and load that into IGV, which can save images.
Hi,
do you mean an ideogram? Similar to some examples on this website?
http://visualization.ritchielab.psu.edu/phenograms/examples
cheers,
Stephan
Thanks, this is what I was looking for
You don't want to plot all 450000 positions in a single figure, do you?