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Plotting / Analyzing InterProscan Outputs

Hi,

I have dozens of xml, tsv and gff3 interproscan outputs of nucleotide sequence data.

Is there any other tools, any bioconductor package, etc to plot or analyze the output???

Thanks,

Waqasuddin Khan.

sequencing alignment blast r
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written by waqasnayab waqasnayab

What kind of plots are you looking for? There is a lot you can do with this data.

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written by SES SES

a plot like go analysis, just like a wego plot,???

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updated by Ram Ram • written by waqasnayab waqasnayab

Hi Waqasuddin,

Did you finally find a way to visualize the xml data? I have the similar output from Interproscan.

Thanks a lot

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written by Chao.wang2 • Chao.wang2

yeah, I used BLAST2GO at the end of the day.

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written by waqasnayab waqasnayab

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