Pairwise distances DNA sequences (K80 model of DNA evolution) [Python]
Hi everyone,
I need to build phylogenetic tree based on aligned DNA sequences. I used first from Bio.Phylo the following functions:
distM = DistanceCalculator('ident').get_distance(my_aligned_sequences)
tree = DistanceTreeConstructor().nj(distM)
However, I would like to compare the sequences using the Kimura 2-parameters ("K80") model of DNA evolution.
I know that in R the dist.dna {ape} function allows to do this, but does anyone know a function in Python that do this ?
Thank you in advance
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