ABI-SOILD sra data

Hello everyone!

I need help with conducting RNA-seq of a certain ABI-SOLID data. Is there an established pipeline or a set of tools that might help me to deal with it?

Thanks!

rna-seq

• 1,480 views • link

written 10.7 years ago by sagardesai91

0 answers

No answers yet.

More posts like this

ProkSeq
written 4.6 years ago by sgadila •

Hello everyone, I was wondering if anyone has used ProkSeq pipeline for bacterial RNA-seq analysis? If so, could you please help me download and setup …
How could I analyse the differential expression of a particular gene with RNA-seq data?
written 5.4 years ago by bioAddict •

Hi everyone! I'm new in RNA-seq data analysis. I'm interested in the differential analysis of a set of particular genes from an open access raw …
Tool/Pipeline to get annotations from RNA-Seq
written 6.6 years ago by Heinrich_M •

Hello everyone, I need an automated way to generate and filter annotations of RNA-Seq data. I have a lot of RNA-Seq data to analyze and …
Check for variation between two replicates in transcriptome data
written 7.1 years ago by sagardesai91

Hello everyone, I have two control samples for an RNA-seq experiment that are behaving very differently, on doing a PCA, they cluster quite far away …
convert MSTRG to human-readable format
written 7.1 years ago by Morris_Chair

Hello everyone, I used the hisat2-stringtie and ballgown pipeline to analyze RNA-seq data and got result with MSTRG format. I tried different combinations and scripts …
Is it advisable to do allele specific expression analysis on single cell RNA-Seq data?
written 7.4 years ago by Susmita Mandal

Hello everyone, I want to do allele expression analysis on single cell RNA-Seq data. I read in a paper that it's always better to do …
Converting sra to fastq
written 10.8 years ago by sagardesai91

Hello everyone, I am trying to convert this set of sra files into the fastq format with the latest version of sratoolkit 2.5.4.1. But I …
How To Calculate Exon Inclusion Levels From Cufflinks
written 12.9 years ago by skm770 •

Is there any way I can get exon inclusion levels from cufflinks. I have different kinds of RNA-seq data with variable read length which we …
How To Get Started Learning Gwas Analysis
written 13.1 years ago by David_emir

Hello All, I have a genotyping data from Human Omni 1 Quad v1.0 DNA Bead Chip with Demographic Particulars of Cases and Controls. Since …
Convert Abi-Solid Reads To Colored Space Fastq
written 14.1 years ago by Prakki Rama

Hi all, Is there any tool or script to convert ABI SoLiD data (csfasta +qual) to colored space FASTQ reads. There is an option in …