Check for variation between two replicates in transcriptome data
Hello everyone, I have two control samples for an RNA-seq experiment that are behaving very differently, on doing a PCA, they cluster quite far away from each other. I want to check for variation between the two samples. Could anyone suggest an appropriate statistical test or a package that could help me with the above? Would z-test do?
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Pearson Correlation is a good start, so
coron the count matrix. What question do you eventually want to answer?Great! I'll try it out, thanks a lot!
I just want to know how different these two replicates are from each other