More posts like this
-
Which data files are required to find GWAS summary statistics?
written by Raju •I have .bed, .bim, and .fam files among these which data files are used to find GWAS summary statistics and how to find them using …
-
Regarding p53 (tumour suppressor gene) mutation and overexpression relation with survival analysis
written by jyotsnap •Hello everyone Can anyone tell that how p53 mutation and overexpression is calculated for survival analysis in tcga data..
-
Kaplan Meier Plotter and Competing risk model survival analysis
written by aronno.geb •Hello everyone, I have performed a **Kaplan-Meier analysis of *IL10* with multiple cancers to analyze the survival rate of patients.** Link – (https://kmplot.com/analysis/index.php?p=background). **How can …
-
problem for gene survival analysis through "Survival" package in R
written by modarziHello, My data belong to subtype of TCGA breast cancer. I have to do survival analysis for this data set. I know "survival" package but …
-
How to determine biallelic CDK12 mutations?
written by Peter •Recently I started the concerning mutations in CEBPA gene within patients with prostate cancer. I got two heterozygous for p.D52fs / p.S323* mutations from my …
-
Use Plink to calculate OR for homozygous ?
written by lmobuchon •Hi everyone, I would like to calculate OR for heterozygous and homozygous for the risk allele of the SNP I identified by GWAS. I only …
-
How genomic positions are selected for genetic testing
written by CYMy understanding is from GWAS study. However, Is there a standard on how many genomic positions should be selected? What threshold should be be used …
-
GWAS regions in CANCER
written by DataminerHi, I recently heard that the GWAS regions can be used to identify putatively functional SNPs. for example, if I have a list of GWAS …
-
How Do You Retrieve The Segmented Copy-Number Scores Of The Tumor Samples And The Paired-Normal Con…
written by liu4gre<p>In "Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci", the author did this analysis. Anyone can tell me how to do this? …
-
How To Find Samples(Or Datasets) With Overall Survival Time In Geo Or Arrayexpress?
written by jlshi.nudt<p>hi, I want to find datasets with overall survival information. But I can custom such a query for GEO or ArrayExpress. Anyone tell me how …