Summarizing long list of GO terms
I performed gene enrichment on a list of differentially expressed genes using Plant MetGenMap and have a long list of enriched GO terms. However, some of these lists have more than 350 GO terms, the limit that the website revigo has for the amount of GO terms you can use in their dataset.
Can someone recommend a simple way to summarize and visualize GO term enrichment for the not-so-computer-savvy? That might be able to take exceptionally large lists of enriched GO terms? I have the list of GO terms, GO IDs, and p-values associated with my gene enrichment so ideally I'd want a program that would somehow accept those as input.
Thank you!
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What do you mean by "visualize" and "summarize"?
Maybe this is what you are looking for? Tools To Find Gene Ontology Term Enrichment
Also you can take a look to the R package pathview, though I am not sure, that this is what you want.
Sorry, was away. I've already ran GO term enrichment analysis and it's produced a list of 300+ GO terms which are considered "enriched" for certain categories. I need a way to make this list smaller by getting rid of redundant terms to a certain level. Also if possible, generate a figure which shows GO terms summarized into their higher level categories in another way which doesn't involve a large list.