Tools to compute the partition function of RNA secondary structure with pseudoknots
I know that NUPACK can compute the partition function of RNA secondary structure with pseudoknots, but NUPACK cannot take non AUGC bases. I need a tool that can take non AUGC bases as input and also can compute the partition function of RNA secondary structure. Thanks in advance:)
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wyj.jackson •
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I digged into the NUPACK package and changed it to what I want. If anyone wants the changed code, please let me know:)