More posts like this
-
How to predict the affinity between Protein and RNA?
written by Alex •I have a list of RNA binding proteins from HyDRa prediction. I have a long list of mRNA, I'm interested in. 1. For the list …
-
Why were protein secondary structure predictions dropped from CASP?
written by alibek.kruglikov11 •I have seen that after CASP5 there is no more assesment of protein secondary structure prediction by CASP. Does anybody know why that is the …
-
How can I get the sequence of 5' and 3' UTR regions of bacterial genome?
written by joannerandy80 •Hi there, Is there any software tool or database to identify the entire 5' and 3' UTR regions of bacterial gene? I am aware that …
-
RNA secondary structure - Feature extraction
written by Manu Madhavan •Hi All, For coding-non coding RNA identification (using Machine learning classifier), I would like to add features extracted from RNA secondary structure. I used RNAfold …
-
Bacterial UTR Analysis tools
written by JoeDoes anyone know of some good tools for bacterial 5' (and 3' maybe) UTR structure/function prediction? I'm interested in identifying promoters, RBSs (quite easy), but …
-
Finding UTR regions in the RNA sequencing data from a non-model organism
written by setaHi all friends, I'm working on a RNA-seq project of a non-model plant, the library is generated from mRNA fraction (enriched with polyA) and sequenced …
-
motif enrichment in 5' UTR vs. 3' UTr
written by RT •Hi all, I have a list of DNA motif found in 5' UTR common in 2 expression groups (using FIRE). Now, we want to test …
-
Identifying Regions Important For Secondary Structure Formation In The Entire Length Of A 3'Utr
written by ancient_learner<p>I am having some problems cloning a big 3'UTR for luciferase assays. This particular 3'UTR is 3.2kbs in length, and I cannot clone it after …
-
Simultaneously Visualizing Secondary Structure Of Two Rna Molecules (Ie. Ribozyme + Target).
written by symphx92 •<p>I am designing synthetic ribozymes, and need to see the secondary structure that arises from its flanking arms binding to a target mRNA. I've used …
-
3 Utrs Annotation
written by Biostar User •<p>Hi all,</p> <p>is there any software for annotation variants located in 3' UTRS ? How can I check if a variant is located within regulatory …