The way to compare ChIPSeq peaks enrichment level in different samples
I have ChIPSeq data from four samples, and I want to compare peaks enrichment level among those samples.
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Ram
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Pinji Lei •
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Pinji Lei •
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You could try MACS2 bdgdiff: https://github.com/taoliu/MACS/wiki/Call-differential-binding-events
Here are some other tools: http://andre-rendeiro.me/2015/04/03/chipseq_diffbind_analysis/
Not exactly peak enrichment, but a convenient and unbiased method is bamFingerprint from deepTools.
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Devon Ryan
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