Localize TFBS, Search annotation
hello,
i have a set of validated TFBS, and i would like determine each TFBS in these promoter sequence how can i localize TFBS in these promotor ? (if i have a consensus sequence how can i localize the experimentally validated cis-regulatory element present in a specific promoter ?
thank you in advance
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
complex question cis-regulatory elements chip-seq
written by carlosalfonsogonzalez6 •
-
MotifFeatures vs AnnotatedFeatures
written by mariameldova •
-
Experimental method to count the mean number of DNA-bound transcription factors
written by Pascal •
-
How to locate the intergeneic SNPs in cis-regulatory element
written by gzr3150 •
-
Motifs position from TSS
written by jaqy •
-
how to find over representation of TFBS for a specific gene
written by rohit •
-
Gene Set Size - When Is It Too Small?
written by PoGibas
-
How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding To A Specific Gene …
written by Ashutosh Pandey
-
Motif Enrichment In Intersection Between Several Genetic Elements
written by Simar •
-
Are All Splice Site Regulatory Elements Within Their Target Gene?
written by Andrea_Bio •
You have to look for the binding motif in your sequences. There are plenty of tools that can do that, e.g. MEME suits. Anyway, look into BIOSTARS there are many similar questions.
thank you for your reply,
but, i want to localize the experimentally validated cis-regulatory element present in a specific promoter, i think if i use MEME for exemple, it finds predicted motifs, may be a false positive.
You can look DBs that have these informations, e,g, TRANSFAC