How to generate synthetic transcription factor binding sites (TFBS)?

Hi, I would like to know is there any tools that can help me to generate synthetic TFBS other than using SMOTE because I'm not familiar with that. To generate a list of synthetic TFBS based on profile matrix in Jaspar or Transfac or based on a list of experimental verified TFBS will do.

profile tfbs genome fasta

• 2,566 views • link

updated 3.9 years ago by Ram

• written 10.9 years ago by allyson1115ar •

0 answers

No answers yet.

More posts like this

Catalog Database to TF binding site
written 5.3 years ago by Shicheng Guo

Is there any high-quality Catalog Database to human TF binding site with cross-validation? > TRANSFAC Matrix models One important point to know is that not …
Databases for PWMs?
written 5.9 years ago by khf0008 •

Hi all, This is my first post ever, so if I'm doing something wrong, just politely let me know! I'm trying to get a list …
PPM, PSSM, and PWM
written 9.7 years ago by bharata1803

Hello, I have several matrix that I downloaded from online database like JASPAR, TRANSFAC, etc. I have compiled the matrix into one big file and …
Download transfac public database
written 10.1 years ago by bharata1803

I downloaded transfac PWM data from this [link][1]. From the date, those data is really old, from 1997 and the transfac version is 3.7. Is …
Help identifying TATA boxes
written 10.3 years ago by kajaenilsen •

Hi! Im doing a bioinformatics exercise, but Im new to this and now I need help.. I have a list of 5 genes that Im …
How to obtain negative data in UCSC genome browser?
written 11.1 years ago by allyson1115ar •

I would like to get negative data that is not bound by any transcription factor or also known as non-TFBS. Anyone know how to generate …
How to obtain predicted or lab-verified TFBS in UCSC Genome Browser?
written 11.1 years ago by allyson1115ar •

I would like to obtain 2 data (any transcription factor will do) that have predicted or lab-verified transcription factor binding sites from UCSC genome browser. …
Bioinformatics tool's to Predict regulatory elements / TFBS / miRs BS
written 11.8 years ago by cherifbenhamda •

Hello all, I need help please, I want to know if there is a list of all bioinformatics tools that can be used to predict …
Gene Regulatory Database
written 12.2 years ago by Tom A •

Hello, I am trying to find a database that contains a list of experimentally validated homo sapiens gene regulatory relationships, both TF-gene or gene-gene (transcriptional …
Transcription Factor Binding Site Prediction
written 15.4 years ago by Panagiotis Alexiou •

Using TF matrices to predict TF binding sites (TFBS) in regions of interest. This is my plan: a. Download TF matrices I have seen TRANSFAC …