The aligners used for illumina RNA-seq data were Tophat, Hisat2, Star etc.. I see that for Ion Torrent RNA-Seq data there are different aligners like …

Hi, What do people use for variant calling on Ion torrent data? I tried germline variant calling from varscan2, but there seem to be too …

<p>Is there any publicly available eQTL data in dogs or some other laurasiatheria genome? If possible something in a format that can be uploaded or …

<p>Given the ChIP-seq data of a handful of species, for example, a few Drosophila species, are there any tools that will predict TFBSs and/or CRMs …

<p>EDIT: I couldn't find orthologs for these 3 genes for human/mouse, so the question is not relevant anymore.</p> <hr/> <p>Does anybody know of any available …

<p>Are there any good tools for de novo transcriptome assembly of hybrid 454+Illumina reads?</p>

<p>Is this Sedum Album Ion Torrent dataset available for download somewhere? <br/> <a href="http://www.genomeweb.com//node/1022011?hq_e=el&amp;hq_m=1184055&amp;hq_l=5&amp;hq_v=41ab930077">http://www.genomeweb.com//node/1022011?hq_e=el&amp;hq_m=1184055&amp;hq_l=5&amp;hq_v=41ab930077</a></p>

<p>I am evaluating different tools for de novo transcriptome assembly (not reference-based or mapping reads to the contigs approach, I am not interested in such …

<p>Are there any publicly available Chip-seq datasets for cancer genome samples? I've seen this paper:</p> <p>Genome-wide Profiling of Chromatin Signatures Reveals Epigenetic Regulation of MicroRNA …

<p>I've seen on Ion Torrent's developers site that people is using MIRA as a <code>de novo</code> assembler of Ion Torrent RNA-seq datasets. I am interested …