Forum: The "grishin" file format for sequence alignments
Hi everyone!
I'm using the RosettaCM, and to "run" request a file on format the named Grishin.
Anyone knows how can I make this format of file?
Thanks
alignment
• 2,691 views
•
link
updated
by
Ram
4.5K
• |
written
by
João Fernandes
1
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Question about seqkit sort function
written by FJCF 0Hi everyone, I need to use seqkit sort option to sort a multifasta file by its sequences name. I've been using `seqkit sort -N multifasta.fa`. …
-
Converting rds file to h5ad and saving raw counts as X
written by sidrah.maryam 7Hello Everyone! I have a rds file and want to convert it to h5ad such that the adata.X contains the raw counts of the rds …
-
KRAKEN2 database build with NCBI nucleotide
written by jimmy0958073736 4Hi everyone I try to download NCBI nucleotide file then translate into KRAKEN2 file. But I meet a problem, having any tool like SRA-toolkit can …
-
Size of the nr database fasta file?
written by Chvatil 14Hello everyone, I'm trying to download the database nr and it is still downloading in fact and its size is actually `100Gb` So I think …
-
pulling out a single pseudochromosome from my vcf file
written by truebeliever24 5Hi everyone, I am trying to extract a single chromosome from my dataset so that I can run analyses using only this sex chromosome and …
-
GO for network analysis in plant
written by thiagobergamoc 0Hi everyone, I would like to know if anyone knows any tool to perform the genetic network enrichment of plants. I used to use BLAST2GO …
-
Diffbind package DESeq2 analysis
written by ximena.garate 0Hi everyone, I'm trying to run the Diffbind package with the results of an AgoIP sequencing experiment and when I run the differential expression I …
-
help with Gene Bank annotation and GFF file
written by hamaor 1Hi everyone, I downloaded one of E.coli's strains fasta file from [here][1]. unfortunately i couldn't find its compatible gff file. in this point if any …
-
Which programs generate good images of structural biology models or molecular dynamics models?
written by João Fernandes 1Hi Guys. I'm trying use the program Blender to create a great images from my structures. But, when i will render, the PC starting a …
-
How can I convert GFF3 to GFF file using rtracklayer package?
written by gustavoborin01 9Hi everyone. I'm trying to convert a GFF3 annotation file to GFF format, using the command lines below on rtracklayer package, but I'm not successfull. …
I believe this page has enough information to solve your problem.