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Best tools for gene analysis, annotation, phylogenetic analysis and comparative tool.

Hi, good day everyone!

Please help me to suggest Tool/ Software/ Server that might help my research that based on gene analysis.

  • Gene annotations
  • Comparative gene analysis tools (Skin genes)
  • Phylogenetic analysis
  • To find the mutated location in the mutated gene

Basically my research is comparing mutated skin genes and normal skin genes.

Thank You Very Much!

Jevitha Bsc Bioinformatics MSU, Malaysia

alignment gene sequence
• 2,233 views • link
updated by Ram Ram • written by bjevitha • bjevitha

Hi,

You can try eSkIN www.persistent.com/eskin) a computational platform for skin research. eSkIN has manually curated knowledgebase on genes associated with skin and helps in the prioritization of skin pathways (Pathway enrihemnt analysis) based on your data. To register: http://eskin.igib.res.in/#/register We are also hosting a webinar on Skin centric analysis of biological data using eSkIN. To register for the webinar: http://eskin.persistent.co.in/#/registerWebinar

• 0 views • link
written by indhupriya.b • indhupriya.b

1 answer

For alignment, in this specific case, I recommend... hmmmm...

Perhaps BBMap. It's particularly good for finding long indels and other major mutations by mapping with fairly low identity.

For other cases, it's entirely possible that I might recommend something else.

• 0 views • link
updated by Ram Ram • written by Brian Bushnell Brian Bushnell

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