Hello everyone. I am new in the field of bioinformatics and I really need you help. I want to design 2 types of networks - gene - gene interactions and microRNA-gene interactions. I have 60 gene in my research and I want to select common microRNA for all of them and then create a network or a pathway graph. The problem is I don't really know how to get the dataset for the program to work. I need an XML document or cuffdiff. I want to use Navigator too. How am i supposed to create the nodes? I was thinking about using the mirSVR score that http://www.microrna.org/ provides. And make a table with microRNA and the corresponding mirSVR score for each gene. I guess the microRNA would be my nodes, but the genes must also be nodes right? So I don't know if using the mirSVR score will be relevant for the network. Any suggestions? Thank you very much! Wonderful day to everyone! Paula
Thank you Asaf! :) i will try to see if it works, i mean if i make it right.