Metabolic Interaction Network analysis
Hello,
I have a list of genes, with which tool I can draw cellular pathway and transcriptome interactions of my genes? Pathway Studio is such a tool but it's commercial. I need to draw pathway diagrams showing the proteins involved in my interest network please
1 answer
Hi Sarah,
for first impressions, I'd suggest the graphviz package for the command line. It arranges nodes and edges automatically in different flavours.
If you need something more fancy, try bioUML workbench (see here); I don't know if they changed their policy by now, but a couple of years ago it was freely available.
Cheers,
Michael
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