Hi, We have a large set of tumor-only WES data that we want to run `music smg`. However, it's unclear from the documentations on whether: …

I used genome music to calculate significant pathways, which works great. In the first, where coverage is calculated, genome music bmr calc-covg --gene-covg-dir geneCov_combined --bam-list …

hi,everyone I have some problems in sample1.covg that is the part of genome music calc-covg. ``` #Gene Length Covered AT_covd CG_covd CpG_covd xuhb 13 13 …

``` xuhb@xuhb-desktop:~/expirment/exam1$ genome music bmr calc-covg-helper --normal-tumor-bam-pair bam1-list --reference-sequence seq.fa --output-dir ex5 --roi-file roi --normal-min-depth 1 --tumor-min-depth 1 --min-mapq 0 Use of uninitialized value $normal_bam …

<p>i am a newer of bioinformatics. i have many difficult to solve.Now,i can&#39;t find the data of genome music bmr calc-covg.Dose anybody can give me …

When I get in the cal-roi-covg and use the command--make. It has a problem in the list; ``` gcc -g -Wall -O2 -I/home/xuhb/xuhb/calc-roi-covg/samtools calcRoiCovg.c -o …

<p>I got the following problem from Pathscan: </p> <p>Can't call method "print" on an undefined value at /usr/local/share/perl/5.14.2/Genome/Model/Tools/Music/PathScan.pm line 403.</p> <p>Here is my input file: …

<p>I am now using MuSiC to calculate BMR, but there is an error. The command I use is </p> <pre><code>&gt; genome music bmr calc-wig-covg --wig-list=/home/share/input/wig_list.txt …

<p>Dear all, </p> <p>I am trying to run bmr calc-covg. But when I use the following command, I receive an error. </p> <pre><code>genome music bmr …

<p>Hi, </p> <p>I am trying to run bmr calc-covg in Genome MuSiC and keep receiving the following error:</p> <p>Can't call method "print" on an undefined …