Does a no-normal pipeline exist for MuSiC?
Hi,
We have a large set of tumor-only WES data that we want to run music smg. However, it's unclear from the documentations on whether:
- Matched tumor-normal bam files are required for
music smgper se, - Running
music bmr calc-bmris necessary before runningmusic smg, and - I can use the output from
music bmr calc-wig-covginstead ofmusic bmr calc-covgas the input ofmusic bmr calc-bmr.
I would like previous users to give us more insight on this. Thanks!
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hi. This has been answered at is needed info (BAM and MAF) files for normal tissues in MUSIC?