anlysis of partial sequenced mucor 18S ribosomal RNA gene

Question

[mralikhosravi]

Hi,

I got a partial sequenced mucor 18S ribosomal RNA gene I would like to analyze it for validation by bioinformatics approach?

Anyone to help the procedure?

How to interpret the result of BLAST, MSA, Phylogenetic analysis on rRNAs?

Thanks

[5heikki]

Ribosomal RNA does not encode a protein, so there are no codons and a codon usage analysis would be nonsensical..

[Michael]

I propose you focus on one question at a time.