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3’UTR sequences for Saccharomyces Cerevisiae (yeast)

Hello,

I have a list of approximately 200 gene names and need to obtain the 3'UTR sequences for each gene. This is for Saccharomyces Cerevisiae (yeast) and an example gene name is YHL036W.

Does a publicly available tool exist that would allow me to upload my list of gene names and download the sequences?

Thank you for your help

gene sequence
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updated by Ram Ram • written by fire_water fire_water

2 answers

Use Biomart. It will allow you to select any part of the genome you desire

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written by Antonio R. Franco Antonio R. Franco

Thank you. Biomart is a very nice tool. However, is it just me or are all of the 3' UTR sequences unavailable for Saccharomyces Cerevisiae ?

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written by fire_water fire_water

Hi! Did you find an answer to this? I'd be really curious to know as I'm having the same problem getting 5' UTRs for S. cerevisiae... mitochondrial, to be specific.

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updated by Ram Ram • written by gemma.atkinson • gemma.atkinson

Hi. I ended up contacting the folks at YeastGenome.org for assistance on how to query their database for the sequences. It's a bit of a process so I would recommend contacting them and explaining exactly what you're trying to do. They're very helpful. Good luck.

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updated by Ram Ram • written by fire_water fire_water

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