How can I quickly download all available sequence data for a long list of organisms?
I have a list of ~200 bacterial species names and I would like to download all of the available sequences for each species in FASTA format.
Is there a way of automating this process?
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chiasmata •
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chiasmata •
2 answers
wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.*
Although maybe you just want the fna or faa file. Check the summary file too..
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