snp to codons dataset
Is there an existing dataset with snp (vcf) with possible codons?
Thanks, pini.
• 1,982 views
•
link
updated
by
Ram
•
written
by
pinikoma •
•
written
by
pinikoma •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Using publicly available dataset as control for GWAS
written by miguellarrazlopezdenovales •
-
Split VCF into separate VCFs by SNP count
written by timothy.delory •
-
How to annotate bam-file using ready annotation gtf
written by Alexandr •
-
Where can I find NGS data to test alignment and SNP detection tool
written by somon_955 •
-
how to import a 1000 genome project vcf file (chromosome file) into a mysql database
written by pinikoma •
-
how to query ensembl sql database - to check if a snp (name = rs...) is in an intron ?
written by pinikoma •
-
find NON Coding SNPs using annovar or ucsc genome browser
written by pinikoma •
-
is the snp in a open reading frame ?
written by pinikoma •
-
tool to translate/convert locus among species ?
written by houkto
-
Gwas Snp Imputation In Plant Species
written by kumar.vinod81
You will need to explain your premise and problem for a more specific solution. A good general resource is HGMD.
Annotation tools like snpEff, Annovar and VEP produce annotation tags for synonymous and non-synonymous mutations. A line corresponding to non-synonymous mutation will contain information about the codon change(something like tCa/tTa) and amino acid change (something like S/T). You just need to annotate your VCF file or download a VCF file that has been annotated using one of these tools.
thanks a lot !