Hi all, I want to know how I can tell if a variant I got is a common SNP or not using UCSC genome browser. …

Hi all, I need to create a BED file with the coding exons (only coding) of all the exome genes, the adjacent intronic region (+-20 …

Hi everyone, I'm working with a VCF file and I've noticed that there are 2 types of POSITION ID, the rs code, which is "rs" …

Hi, I am attempting to carry out genome-wide Dn/Ds analyses, and have predicted coding sequences and proteins from two species using Augustus. My problem is …

I want to use cruzdb to query a list of SNPs by rs id in a text file and retrieve sequence including 200 basepairs flanking …

how to query ensembl sql database - to check if a snp (name = rs...) is in an intron ? I would like to use …

Hello all, How do I check if a selected snp is in an open reading frame (any orf..)? Thanks, pini.

Hi, I have downloaded a fasta file from dbsnp of all snps for a certain gene. Unfortunately that fasta file is in nucleotide format, where …

<p>(newly edited version) I try using UCSC Table Browser to help summarize SNP data, but have encountered the same problem all the time. Wherever and …

<p>Hi all,</p> <p>I have a EST DNA sequence database and I wish it to be searched for protein identification using tandem mass spectrometry data. However …