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how to determine the interacting genes

Dear Friends,

I am working with histone proteins in my new project. I am trying to determine the genes interacting with HDAC11 gene. ultimately looking for genes various pathways leads to cancer. is there any good webservers or databases I can look for sorting out the genes for this study?

Thanks for reply

genes-interaction pathway histone-proteins
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updated by Ram Ram • written by Sabine Sabine

1 answer

Hi sana,

Please have a look in " string" database. Here you need to chose specific organism to see the interacting gene.

http://string-db.org/

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written by HG HG

as far i know, it gives the interaction with modelled or existing protein structures only..still i will be able to check again. thanks for the valuable reply..cheers

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written by Sabine Sabine

Yes it will show you only existing protein in DataBase. If you have some background information about metabolic network then you can also try in any network visualization tool such as "Cytoscape"

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updated by Ram Ram • written by HG HG

How about BioGrid..any idea? please share..thanks

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written by Sabine Sabine

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