How to get copy number change co-ordinates for all cancers from cbioportal
I have discovered this from the TGCA which looks like a really useful resource.
http://www.cbioportal.org/index.do
However rather than letting me download all genes associated with copy number changes from a sequenced cancer I have to select the genes Im interested in and then it lets me download them. Ideally I want to be able to download all the genes for a particular cancer (even better all the genes associated with copy number changes). Is there a way of doing this ?perhaps with the R package they have also developed?
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