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Python function to obtain secondary structure using Biopython

Hi,

I have to make a python function that is able to check the secondary structure information for each sequence present in a fasta file, using biopython.

Can somebody help me?

sequence blast
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updated by Ram Ram • written by filipa.simoes93 • filipa.simoes93

1 answer

Does each sequence have a 3D structure already? If so, you pick up corresponding 3D structure PDB file after a blast and query the PDB file. Else, you'll have to look for secondary structure prediction algorithms.

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written by Ram Ram

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