Fetching corresponding sequences from a fasta file using coordinates
Hi everyone, I am new to python/biopython therefore I need this help. I want to use python/biopython to fetch the corresponding sequences from a fasta file having multiple sequences using coordinates such as unique identifier, start position, end position, strand information stored in a csv file. Please let me know the script. Thanks a lot.
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sharadlko1 •
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sharadlko1 •
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Have you tried to search for past threads on this topic here?
That's not how it works. You need to show some effort from your side as well.
Also, why does it have to be python?
No need to use Python. Here is a procedure and ready-made script for you to use with your BED file and reference genome of choice. Good luck!
You cannot ask for a script here. But you can ask for help resolving any issue with your script/pseudo code or discussing the basic idea what you are going to implement.