Prediction of operon in bacterial genomes

Is there any tool available for predicting operon in whole bacterial genomes?

I found many papers on the topic, but not tools available.

annotation genome operon

• 4,434 views • link

updated 4.3 years ago by Ram

• written 11.5 years ago by dago

2 answers

You can try DOOR 2.0 database

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updated 4.3 years ago by Ram

• written 10.6 years ago by 2351688559 •

This looks indeed interesting

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updated 4.3 years ago by Ram

• written 10.6 years ago by dago

Have you tried Prodigal?

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updated 4.3 years ago by Ram

• written 11.5 years ago by jing •

well, as far as I know Prodigal is a Gene finder tool, not an operon finding tool.

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written 11.5 years ago by dago

Hi! I read your post about COG annotation and operon prediction. Now I 'm facing the same problem. Have you got your problems solved? I guess I may need your help! Thanks!

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updated 4.3 years ago by Ram

• written 11.0 years ago by 2351688559 •

Hi, sorry for the late answer. I guess that looking at the questions on biostars you can find the answer you need. Otherwise you can open another post and I am sure you will get help.

• 0 views • link

written 10.6 years ago by dago

Hi! How are you?

Have you got your operon predicted? Would you mind telling me what you are going to do with the predictions? I have got my predictions, but I have difficulties on how to analyze them.

Thank you!

• 1 views • link

updated 4.3 years ago by Ram

• written 10.6 years ago by 2351688559 •

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