Hi there
I have got several thousands cnvs and want to merge them into cnvrs, besides when I got the cnvs, I want to map them in a chromosome. who can help me
Thanks a lot
john
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yanjuncong •
Hi, I'm the author of CNVRuler (which I'll change the name soon, though). Sorry, I couldn't find this question till today.
I assume you used old version of it and your data was non-human. You can download the latest version of this from here
Let me know if you still have a problem.
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lomolith •
Hi lomolith
Thanks for your help, I will try to use it.
John
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yanjuncong •
Hi lomolith
I have tried the software you gave to me. it can calculate the data from CNVpartition and Penncnv directly. It's great, however, it looks cannot read the data I made manually. I tried to build a file like the manual of your software, setting up 5 columns . But I do not know why it cannot be read. Could you give your email address, I can send it to you directly.
Thanks a lot
John
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yanjuncong •
Try ParseCNV. Given the output, you can use UCSC Genome Graphs to draw them on chromosomes.
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jglessnd •
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Did you search biostars.org to answer your question? What did you find?
Yes, just one blog called "map cnv". but the answer is not ok. I have no idea about R and I also have no idea about galaxy. I need to submit my paper this week which made me crazy. I used a software called cnvruler to overlap my data. however, there is X Y chromosome showed in the result. I have deleted all the cnvs on X & Y which made me so confused. so I want to look for another software to double check it. if you can help me I will very appreciate.