how to download sequences of gene product associated with certain GO term
Hi
In Gene Ontology, we find a certain GO term of interest. When looking into the GO term, I found more 10000 gene product associations. (example : http://amigo1.geneontology.org/cgi-bin/amigo/term_details?term=GO:0016032#lineage) How can I get those 10000 gene product sequences? I tried to use web directly but request size cannot be bigger than 1000 genes. Any R package or Perl package can solve this problem?
2 answers
Try GeneSCF perl based (works on LINUX and windows 10 bash1607). GeneSCF can be used for
- gene enrichment analysdis with your gene list
- Download complete terms and genes as plain text format (TAB separated table)
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