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Location And Expression Of Lincrna

Is there any software/script available for identifying long intergenic non coding RNAs that may be, from evidence of location and expression, functionally linked to protein-coding regions? The raw data I'm working with is RNA-seq.

rna

2 answers

The following article should give you a very good starting point on identifying lincRNAs:

Cabili et al, 2011: Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

You can also try the FunctionalRNA Database and the download section.

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