Hello everyone,
I have a list with some non-coding RNAs related with one disease, so I would to look for interactions between this ncRNAs and mRNA. Well, to miRNA I found a lot of databases for target predictions, but for others ncRNA I cant found.
My list is composed for:
Long intergenic non-protein coding RNAs (LincRNA) = 11 Non-coding RNAs (ncRNA) = 7 Small nucleolar RNAs (snoRNA) = 2
Anyone know a database or a way to predict targes for this ncRNAs?
Best regards,
1 answer
You may use lncRNA-target interactions ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) and small ncRNA-target interactions ( http://starbase.sysu.edu.cn/rnaRNA.php?source=sncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data.
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Are you certain about the mechanism being direct interactions with mRNAs?
Dear @Asaf
Yes, I'm certain about the miRNAs but not about the others ncRNAS, this can interact with others genetics elements?
There is one tool to do that?
Best regards,
Dear Leite,
These may be of help in achieving your goals: