Is there an open source standalone tool that finds *de novo* direct interspersed DNA repeats in a small sequence and allows for mismatches? Something similar …

I'm looking for a tool to search for an unusual criteria of repeats. Specifically, I'm trying to find pseudo-repeats that are: 1. ~ 1000-2000 bp …

I have a couple of target genomic regions from bacteria. Now I want to check if they are suitable to be templates for a PCR …

Interspersed repeats are often defined as repetitive sequences dispersed throughout the genome. However such definition (IMO) does not exclude Tandem Repeat Sequences. So I started …

I have a single fasta file genome that contains 40Mbps spread throughout ~30,000 separate sequences (contigs). About half is expected to be repetitive DNA. I …

<p>i want to know is there any tool to seperate only functional area i.e exons from whole DNA sequence?</p>

<p>Hi!</p> <p>I&#39;m wondering whether there are simple tools (e.g. Java, R/Bioconductor) available for plotting positions of custom SNPs on top of gene region (exons and …

<p>When running RepeatMasker locally, it runs for identify different types of repetitive elements. - identifying long interspersed repeats, tough LINE1s, Simple Repeats, ALUs , ancient …

<p>Hello</p> <p>I am converting pileup to vcf using sam2vcf. The tools says I need the reference sequence when indels are present. Whilst downloading the reference …

<p>Hi, there are several script to count simple sequence repeat (SSR) in dna sequences (like MISA). i want to know that is there any script …