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How to get ortholog sequences.

Hi, everyone.

I want to get the sequence pair of ortholog.

e.g. For AGO2, I want to get the human AGO2 amino-acid sequence and the rat AGO2 amino-acid sequence.

Thank you.

sequence ortholog

4 answers

After searching here on biostars.org I found OMA Browser.

This is quick and easy way to find orthologs for a single gene.

http://omabrowser.org/cgi-bin/gateway.pl?p1=AGO2&f=SearchDb

How about http://www.uniprot.org/uniprot/?query=AGO2&sort=score ?

You can check metaPhOrs to get consistency-based orthologs, their sequences and phylogenetic trees:

You can get the information at ensembl biomart. Input your list of genes and then select attributes/homologs/orthologs for the species you need.

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