Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using any visualization network can anyone please suggest any tool, where i can visualization in network i have gone though few paper which use cytoscape, any other suggestion also appreciated.
Thank you advance.
1 answer
I recommend using Network 4.6.1.2 which can be downloaded here
It can clearly show your haplotypes in minimum spanning network. A tutorial is also available on the website.
If you just play around, it produces beautiful networks. It is generally used in population genetics.
Have a look on this publication, I had made a network on Mitochondrial sequences.
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written
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Manvendra Singh
You would just need to have your file in aligned format, fasta or nexus. Just read it that how it works, then it would be even easier.
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written
by
Manvendra Singh
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