extracting sequence from large fasta file
I want to extract subsequences from a large fasta file. For example, I need to extract the subsequence from location 46 to 3615 for the id IWGSC_scaff_1308330. I have 1500 such ids and each id contains a range. Is there any script available?
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BDK_compbio
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Load sequence in a java String or StringBuilder and get the substring between your two positions
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search biostars please. This question has been already asked a gazillon times. E.g: Getting Sequence Based On Chromosome No And Coordinates From Whole Genome Fasta File
does it.
duplicate question, but: http://sites.psu.edu/biomonika/2014/08/08/extract-sequence-from-fasta-file-at-particular-positions-only/
Hello sbdk82!
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PS: Duplicate post of question asked many times