I was provided a VCF file and a snp-annotated VEP output file separately. I know VEP tool can annotate VCF by adding consequence field of …

Hi, I have annotated my file with vep loftool. I want to find out what is threshold used by vep loftool to assign variants as …

hi all, i annotated a VCF file with ClinVar annotations and that worked fine. What I am interested to know is which entries in my …

hi everyone i have an annotated vcf file (using snpEff) and now i want to extract gene names for non-synonymous SNPs and then do GO …

hi everyone first question: i have a vcf file resulted from samtools, belonging to a mammalian that assembled in scoffold level. I annotated it and …

Hi All, I am trying to annotate few VCF files from VEP with Cosmic ID's and same VCF is being annotated using Cosmic VCF's. For …

Hi, I have a VCF containing the SNP information between the two genotypes of interest and using that VCF and i have annotated the SNPs …

<p>Hi All,</p> <p>Can some one help me in knowing algorithms for converting gVCF file for VCF file. As per <a href='https://sites.google.com/site/gvcftools/home/about-gvcf'>https://sites.google.com/site/gvcftools/home/about-gvcf</a> website, it can be …

<p>Hi All,</p> <p>Can some one help me understand that what is homozygous indel/snp &amp; heterozygous indel/snp ? And how do we term it homozygous indel/snp …

<p>I have downloaded SNP data from the 1000 genomes project through Biomart and UCSC genome browser. These SNP data are annotated as being synonymous or …