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how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analysis

hi everyone

i have an annotated vcf file (using snpEff) and now i want to extract gene names for non-synonymous SNPs and then do GO analysis by DAVID. how can i do it and how can i rank genes containing most non-synonymous snps.

thanks in advance

snp non-synonymous go
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written by reza reza

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