Difference between Cosmic Annotation from VEP and directly from COSMIC VCF.

Hi All,

I am trying to annotate few VCF files from VEP with Cosmic ID's and same VCF is being annotated using Cosmic VCF's. For some reasons I am getting I am more Cosmic hits from VEP annotation compare to the direct annotation from Cosmic VCF files.

If some one else has observed same trend ? How VEP is picking up cosmic annotations ? If sources are same then why I am getting different result from both.

Thanks

vep annotation

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updated 5.5 years ago by yussab •

• written 9.8 years ago by always_learning

Dear learner,

I'm sorry to answer with a question. But I was wondering how do you annotate from VEP with Cosmic ID's??? I'm struggling to find how to add cosmic information using VEP.

Thank you very much, Youssef

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written 5.5 years ago by yussab •

0 answers

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