How to convert the Peakzilla TSV output to the BED format expected by Homer
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to trace back found motifs from homer and fimo to bed file so that visualization in genome brow…
written by EdisonJ •
-
Nucleotide Frequency - HOMER?
written by kstangline •
-
How to get Motif positions by peak (not by Chromosome) using Homer annotatePeaks.pl ??
written by carina2817 •
-
How to find peaks which have specific TF motif sequence
written by km1986 •
-
Discrepancy in HOMER output
written by doan.dinh •
-
How to convert Jaspar motif to input into homer?
written by a.rex
-
What is the difference between "findMotifsGenome.pl" and "findMotifs.pl" in homer motif analysis?
written by mikysyc2016
-
use Homer to annotation region of ChIP-seq peaks.
written by mikysyc2016
-
HOMER findMotifsGenome.pl to get the location of the motifs
written by bsharmi6 •
-
Finding instances of motifs near peaks
written by Prakash
The tsv file might already be in BED format, which is just a special case of tsv. Show a few lines and it should be apparent what reformatting is needed.
Deleted....
Devon Ryan,
Yeah I found it similar to BED file format. I able to fix this problem.
Thanking you for consideration and time!