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How to convert Jaspar motif to input into homer?

I want to use Homer to scan for a particular motif in my genome of interest (under ATAC peaks). This motif is found in Jaspar - how can I convert it to a format suitable for Homer?

homer jaspar
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updated by carinapaola20 • carinapaola20 • written by a.rex a.rex

So you want to see if a certain motif is enriched in your peaks or you want to check and get position of a certain motif in the peaks? The latter is a job for fimo from the MEME suite.

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written by ATpoint ATpoint

Hi, did you finally solve this problem? I met this too.

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written by 2050814297 • 2050814297

1 answer

I have used the R package universalmotif

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written by carinapaola20 • carinapaola20

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