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Are there publicly available metagenomic RNA-Seq datasets?

Hi,

Are there any publicly available metagenomic RNA-Seq datasets?

Only one I've found is the Human Microbiome Project single RNA-Seq project.

Illumina is preferred, but any sequencing platform will do.

rna-seq metagenome public
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updated by karsten.sieber • karsten.sieber • written by bulovic.ana bulovic.ana

2 answers

I suggest you search ENA. They have a simple Text search, which you can use to search for example for "metagenomics rna-seq" or "metagenomics rna", as well as an Advanced search, that allows you to construct more elaborate queries.

You can also have a look at EBI Metagenomics and ArrayExpress.

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updated by Ram Ram • written by Bert Overduin Bert Overduin

You may also be able to search the US equivalent: http://www.ncbi.nlm.nih.gov/sra

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updated by Ram Ram • written by karsten.sieber • karsten.sieber

I have tried the SRA, but cannot seem to find any metagenomic samples. Thanks, though.

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updated by Ram Ram • written by bulovic.ana bulovic.ana

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