Hello,
I would like to do metaanalysis of proteomics data. Is there any publicly available proteomics database or repository like GEO/arrayexpress?
Based on google search, I found: http://www.ebi.ac.uk/pride/archive/
Do you know of any other repositories/db?
Thanks
Diwan
3 answers
I think PeptideAtlas might also have mass-spec data for samples that potentially have meta-data, but PRIDE is the main one that comes to mind.
It is much harder to find large, publicly available proteomics datasets (unless you count protein arrays: for example, I think TCGA has RPPA protein array data and there is also this website that can do some protein array analysis: http://app1.bioinformatics.mdanderson.org/tcpa/_design/basic/index.html )
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written
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Charles Warden
How about the Protein DataBank?
There's also Entrez Protein.
May want to check
Global Proteome Machine: http://gpmdb.thegpm.org/
Proteome Exchange (cross links with PRIDE): http://proteomecentral.proteomexchange.org/cgi/GetDataset
CPTAC data portal (focus on cancer): https://cptac-data-portal.georgetown.edu/cptacPublic/
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