Finding annotation package for two color agilent array data sets
Hello! I am trying to do DE expression for two color agilent array publicly available data set. I am unable to find the annotation library. I have pasted the link of the paper and datasets in the following. I am new toDNA microarray analysis. I have done affymetrix before and it was easy to find the platform on the GEO database. However, I am having hard time finding this library to annotate the probes. Please let me know if there are any options available! It will be very useful! Thanks! https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-145/
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to retrieve Microarray probe annotations
written by mohammedtoufiq91
-
Probe annotation file for microarray platform MoGene-1_0-st-v1
written by Pranshu Mehra •
-
Analysis of Illumina HumanHT-12_V4
written by j_jamal96 •
-
Problems with ArrayExpress datasets downloads on Bioconductor
written by Davide Chicco
-
Does microarray cover all genes?
written by wenbinm •
-
subsetting limma EList in a dataframe
written by salvatore.raieli2
-
Job: RNA Seq. analysis tutor for specific datasets for visually impaired student needed
written by tfhahn •
-
BiomaRt agilent array IDs
written by wiggs38 •
-
Estimate Absolute Expression Value From Microarray Data
written by Djiao •
-
Microarray Meta-Analysis
written by Nasir •
Click on the array type, find this link https://www.ebi.ac.uk/arrayexpress/arrays/A-MEXP-1152/?ref=E-MTAB-145, then see on the bottom the annotation file.
Thank You! So, I do not have a chip based data base to linkk probe ID to gene symbol and Entrez ID etc. I have a csv file with probe IDs and a reference seq ID. Can someone please help me to build a library or make a database linking the two?
Thanks!