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38
votes
26
replies
19k
views
16 follow
GO analysis: DAVID vs GREAT vs GOrilla
RNA-Seq
ChIP-Seq
GO
gene ontology
written 8.2 years ago by
biostart
▴ 370
0
votes
1
reply
1.9k
views
Comment:
Comment: Bowtie paired-end mapping: insert size issue
2.3 years ago by
biostart
▴ 370
0
votes
1
reply
1.9k
views
Comment:
Comment: Bowtie paired-end mapping: insert size issue
2.3 years ago by
biostart
▴ 370
0
votes
1
reply
1.9k
views
Comment:
Comment: Bowtie paired-end mapping: insert size issue
2.3 years ago by
biostart
▴ 370
0
votes
1
reply
1.9k
views
Comment:
Comment: Bowtie paired-end mapping: insert size issue
2.3 years ago by
biostart
▴ 370
0
votes
9
replies
1.9k
views
Bowtie paired-end mapping: insert size issue
alignment
mapping
bowtie
updated 2.3 years ago by
GenoMax
141k • written 2.3 years ago by
biostart
▴ 370
3
votes
2
replies
814
views
Mapping SRA files without unpacking?
alignment
Bowtie
SRA
sequencing
updated 2.5 years ago by
ATpoint
82k • written 2.5 years ago by
biostart
▴ 370
0
votes
0
replies
2.8k
views
Comment:
C: Are HOMER aggregate proflles normalized to the read depth of each ChIP-seq sampl
updated 4.3 years ago by
Ram
43k • written 8.2 years ago by
biostart
▴ 370
3
votes
9
replies
3.6k
views
7 follow
Gene Ontology without enrichment analysis
next-gen
RNA-Seq
ChIP-Seq
updated 4.3 years ago by
yairgatt
▴ 10 • written 8.1 years ago by
biostart
▴ 370
0
votes
0
replies
2.3k
views
Comment:
C: SOLiD reads unreadable to Bowtie after unpacking from .sra archive [still open]
updated 4.4 years ago by
Ram
43k • written 8.2 years ago by
biostart
▴ 370
0
votes
0
replies
2.3k
views
Comment:
C: SOLiD reads unreadable to Bowtie after unpacking from .sra archive
updated 4.4 years ago by
Ram
43k • written 8.2 years ago by
biostart
▴ 370
4
votes
9
replies
1.8k
views
Correlation of two ChIP-seq signals?
ChIP-Seq
updated 4.4 years ago by
Prakash
★ 2.2k • written 4.4 years ago by
biostart
▴ 370
0
votes
1
reply
1.8k
views
Comment:
C: Correlation of two ChIP-seq signals?
4.4 years ago by
biostart
▴ 370
0
votes
1
reply
1.8k
views
Comment:
C: Correlation of two ChIP-seq signals?
4.4 years ago by
biostart
▴ 370
0
votes
0
replies
1.8k
views
Comment:
C: Correlation of two ChIP-seq signals?
4.4 years ago by
biostart
▴ 370
0
votes
0
replies
2.0k
views
Comment:
C: Problem mapping paired-end Illumina reads
5.3 years ago by
biostart
▴ 370
0
votes
1
reply
2.0k
views
Comment:
C: Problem mapping paired-end Illumina reads
5.3 years ago by
biostart
▴ 370
0
votes
1
reply
2.0k
views
Comment:
C: Problem mapping paired-end Illumina reads
5.3 years ago by
biostart
▴ 370
0
votes
1
reply
2.0k
views
Comment:
C: Problem mapping paired-end Illumina reads
5.3 years ago by
biostart
▴ 370
0
votes
0
replies
2.0k
views
Comment:
C: Problem mapping paired-end Illumina reads
5.3 years ago by
biostart
▴ 370
0
votes
1
reply
2.0k
views
Comment:
C: Problem mapping paired-end Illumina reads
5.3 years ago by
biostart
▴ 370
0
votes
1
reply
2.0k
views
Comment:
C: Problem mapping paired-end Illumina reads
5.3 years ago by
biostart
▴ 370
0
votes
0
replies
891
views
Answer:
A: Associating DNA methylation and nucleosome occupancy with AS events
5.3 years ago by
biostart
▴ 370
0
votes
11
replies
2.0k
views
Problem mapping paired-end Illumina reads
ChIP-Seq
alignment
paired-end
updated 5.3 years ago by
swbarnes2
14k • written 5.3 years ago by
biostart
▴ 370
0
votes
1
reply
1.4k
views
Answer:
A: Confusion of TF-gene interactions database
5.3 years ago by
biostart
▴ 370
1
vote
0
replies
1.0k
views
Answer:
A: Is GC-bias correction valid for MeDIP-seq data preprocessing?
5.3 years ago by
biostart
▴ 370
0
votes
0
replies
1.2k
views
Comment:
C: Binding affinity DB out there?
5.3 years ago by
biostart
▴ 370
3
votes
1
reply
2.4k
views
How to create BigWig files with normalised signal using ChIP-seq and Input?
ChIP-Seq
BigWig
updated 5.3 years ago by
Devon Ryan
104k • written 5.3 years ago by
biostart
▴ 370
2
votes
0
replies
1.0k
views
Heatmaps of bisulfite sequencing data
heatmap
methylation
5.4 years ago by
biostart
▴ 370
1
vote
1
reply
1.7k
views
HOMER works incorrectly with -sspe option for paired-end reads
ChIP-Seq
HOMER
updated 5.7 years ago by
Kevin Blighe
87k • written 5.7 years ago by
biostart
▴ 370
0
votes
0
replies
15k
views
Comment:
A: Add labels in the annotation bar of pheatmap
5.7 years ago by
biostart
▴ 370
0
votes
0
replies
2.2k
views
Comment:
C: MACS peak calling of paired-end reads in SAM format
5.7 years ago by
biostart
▴ 370
1
vote
3
replies
2.2k
views
MACS peak calling of paired-end reads in SAM format
ChIP-Seq
MACS
SAM
5.7 years ago by
biostart
▴ 370
5
votes
9
replies
4.2k
views
6 follow
Peak calling for broad histone-modification regions
ChIP-Seq
updated 6.9 years ago by
Rashedul Islam
▴ 470 • written 7.0 years ago by
biostart
▴ 370
0
votes
0
replies
4.2k
views
Comment:
C: Peak calling for broad histone-modification regions
7.0 years ago by
biostart
▴ 370
0
votes
1
reply
4.2k
views
Comment:
C: Peak calling for broad histone-modification regions using MACS or HOMER
7.0 years ago by
biostart
▴ 370
2
votes
3
replies
5.0k
views
What's the name in RepeatMasker for mouse major satellite repeats?
sequence
alignment
RNA-Seq
updated 7.1 years ago by
Mike
▴ 60 • written 7.1 years ago by
biostart
▴ 370
0
votes
0
replies
5.0k
views
Comment:
C: What's the name in RepeatMasker for mouse major satellite repeats?
7.1 years ago by
biostart
▴ 370
1
vote
0
replies
1.3k
views
Comment:
C: bias correction (an example from ChIP-seq)
7.1 years ago by
biostart
▴ 370
0
votes
0
replies
2.9k
views
Answer:
C: Motif finding with HOMER
7.4 years ago by
biostart
▴ 370
0
votes
1
reply
2.9k
views
Comment:
C: Motif finding with HOMER
7.4 years ago by
biostart
▴ 370
0
votes
5
replies
2.9k
views
Motif finding with HOMER
ChIP-Seq
sequencing
motif
pwm
7.4 years ago by
biostart
▴ 370
1
vote
2
replies
2.8k
views
Are HOMER aggregate proflles normalized to the read depth of each ChIP-seq sample? [still open]
ChIP-Seq
sequencing
updated 7.4 years ago by
Biostar
20 • written 8.3 years ago by
biostart
▴ 370
0
votes
0
replies
2.1k
views
Comment:
C: find motif enrichment/depletion analysis
7.5 years ago by
biostart
▴ 370
0
votes
0
replies
3.5k
views
Comment:
C: Statistical test to compare the number of upregulated genes in a subgroup of gen
7.6 years ago by
biostart
▴ 370
0
votes
1
reply
3.5k
views
Comment:
C: Statistical test to compare the number of upregulated genes in a subgroup of gen
7.6 years ago by
biostart
▴ 370
0
votes
1
reply
3.5k
views
Comment:
C: Statistical test to compare the number of upregulated genes in a subgroup of gen
7.6 years ago by
biostart
▴ 370
1
vote
1
reply
2.1k
views
Comment:
C: Nucleosome Peak Callers
7.6 years ago by
biostart
▴ 370
6
votes
10
replies
3.5k
views
Statistical test to compare the number of upregulated genes in a subgroup of genes versus all genes?
rna-seq
updated 7.6 years ago by
vakul.mohanty
▴ 270 • written 7.6 years ago by
biostart
▴ 370
2
votes
0
replies
2.3k
views
Answer:
A: Nucleosome positioning dataset
7.6 years ago by
biostart
▴ 370
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